| Name : R-hiphop
| |
| Version : 0.0.1
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.2.12
| Date : 2024-06-14 11:10:04
|
| Group : Development/Libraries/Other
| Source RPM : R-hiphop-0.0.1-lp153.2.12.src.rpm
|
| Size : 1.07 MB
| |
| Packager : (none)
| |
| Summary : Parentage Assignment using Bi-Allelic Genetic Markers
|
Description :
Can be used for paternity and maternity assignment and outperforms
conventional methods where closely related individuals occur in the
pool of possible parents. The method compares the genotypes of
offspring with any combination of potentials parents and scores the
number of mismatches of these individuals at bi-allelic genetic markers
(e.g. Single Nucleotide Polymorphisms). It elaborates on a prior
exclusion method based on the Homozygous Opposite Test (HOT; Huisman
2017 < doi:10.1111/1755-0998.12665>) by introducing the additional
exclusion criterion HIPHOP (Homozygous Identical Parents, Heterozygous
Offspring are Precluded; Cockburn et al., in revision). Potential
parents are excluded if they have more mismatches than can be expected
due to genotyping error and mutation, and thereby one can identify the
true genetic parents and detect situations where one (or both) of the
true parents is not sampled. Package \'hiphop\' can deal with (a) the
case where there is contextual information about parentage of the
mother (i.e. a female has been seen to be involved in reproductive
tasks such as nest building), but paternity is unknown (e.g. due to
promiscuity), (b) where both parents need to be assigned, because there
is no contextual information on which female laid eggs and which male
fertilized them (e.g. polygynandrous mating system where multiple
females and males deposit young in a common nest, or organisms with
external fertilisation that breed in aggregations). For details:
Cockburn, A., Penalba, J.V.,Jaccoud, D.,Kilian, A., Brouwer, L.,
Double, M.C., Margraf, N., Osmond, H.L., van de Pol, M. and Kruuk,
L.E.B. (in revision). HIPHOP: improved paternity assignment among close
relatives using a simple exclusion method for bi-allelic markers.
Molecular Ecology Resources, DOI to be added upon acceptance.
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
