| Name : R-iCAMP
| |
| Version : 1.5.12
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.11.2
| Date : 2024-06-14 11:37:38
|
| Group : Development/Libraries/Other
| Source RPM : R-iCAMP-1.5.12-lp153.11.2.src.rpm
|
| Size : 1.29 MB
| |
| Packager : (none)
| |
| Summary : Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis
|
Description :
To implement a general framework to quantitatively infer Community
Assembly Mechanisms by Phylogenetic-bin-based null model analysis,
abbreviated as \'iCAMP\' (Ning et al 2020)
< doi:10.1038/s41467-020-18560-z>. It can quantitatively assess the
relative importance of different community assembly processes, such as
selection, dispersal, and drift, for both communities and each
phylogenetic group (\'bin\'). Each bin usually consists of different taxa
from a family or an order. The package also provides functions to
implement some other published methods, including neutral taxa
percentage (Burns et al 2016) < doi:10.1038/ismej.2015.142> based on
neutral theory model and quantifying assembly processes based on
entire-community null models (\'QPEN\', Stegen et al 2013)
< doi:10.1038/ismej.2013.93>. It also includes some handy functions,
particularly for big datasets, such as phylogenetic and taxonomic null
model analysis at both community and bin levels, between-taxa niche
difference and phylogenetic distance calculation, phylogenetic signal
test within phylogenetic groups, midpoint root of big trees, etc.
Version 1.3.x mainly improved the function for \'QPEN\' and added
function \'icamp.cate()\' to summarize \'iCAMP\' results for different
categories of taxa (e.g. core versus rare taxa).
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
