| Name : R-ipADMIXTURE
| |
| Version : 0.1.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.18.2
| Date : 2024-06-14 12:00:00
|
| Group : Development/Libraries/Other
| Source RPM : R-ipADMIXTURE-0.1.0-lp153.18.2.src.rpm
|
| Size : 0.95 MB
| |
| Packager : (none)
| |
| Summary : Iterative Pruning Population Admixture Inference Framework
|
Description :
A data clustering package based on admixture ratios (Q matrix) of
population structure. The framework is based on iterative Pruning
procedure that performs data clustering by splitting a given population
into subclusters until meeting the condition of stopping criteria the
same as ipPCA, iNJclust, and IPCAPS frameworks. The package also
provides a function to retrieve phylogeny tree that construct a
neighbor-joining tree based on a similar matrix between clusters. By
given multiple Q matrices with varying a number of ancestors (K), the
framework define a similar value between clusters i,j as a minimum
number K* that makes majority of members of two clusters are in the
different clusters. This K* reflexes a minimum number of ancestors we
need to splitting cluster i,j into different clusters if we assign K*
clusters based on maximum admixture ratio of individuals. The
publication of this package is at Chainarong Amornbunchornvej,
Pongsakorn Wangkumhang, and Sissades Tongsima (2020)
< doi:10.1101/2020.03.21.001206>.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
