| Name : R-ontophylo
| |
| Version : 1.1.3
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.2.1
| Date : 2024-06-14 11:27:56
|
| Group : Development/Libraries/Other
| Source RPM : R-ontophylo-1.1.3-lp153.2.1.src.rpm
|
| Size : 3.49 MB
| |
| Packager : (none)
| |
| Summary : Ontology-Informed Phylogenetic Comparative Analyses
|
Description :
Provides new tools for analyzing discrete trait data integrating
bio-ontologies and phylogenetics. It expands on the previous work of
Tarasov et al. (2019) < doi:10.1093/isd/ixz009>. The PARAMO pipeline
allows to reconstruct ancestral phenomes treating groups of
morphological traits as a single complex character. The pipeline
incorporates knowledge from ontologies during the amalgamation of
individual character stochastic maps. Here we expand the current PARAMO
functionality by adding new statistical methods for inferring
evolutionary phenome dynamics using non-homogeneous Poisson process
(NHPP). The new functionalities include: (1) reconstruction of
evolutionary rate shifts of phenomes across lineages and time; (2)
reconstruction of morphospace dynamics through time; and (3) estimation
of rates of phenome evolution at different levels of anatomical
hierarchy (e.g., entire body or specific regions only). The package
also includes user-friendly tools for visualizing evolutionary rates of
different anatomical regions using vector images of the organisms of
interest.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
