| Name : R-phyclust
| |
| Version : 0.1.34
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.1.5
| Date : 2024-06-14 11:06:46
|
| Group : Development/Libraries/Other
| Source RPM : R-phyclust-0.1.34-lp153.1.5.src.rpm
|
| Size : 1.50 MB
| |
| Packager : (none)
| |
| Summary : Phylogenetic Clustering (Phyloclustering)
|
Description :
Phylogenetic clustering (phyloclustering) is an evolutionary Continuous
Time Markov Chain model-based approach to identify population structure
from molecular data without assuming linkage equilibrium. The package
phyclust (Chen 2011) provides a convenient implementation of
phyloclustering for DNA and SNP data, capable of clustering individuals
into subpopulations and identifying molecular sequences representative
of those subpopulations. It is designed in C for performance,
interfaced with R for visualization, and incorporates other popular
open source programs including ms (Hudson 2002)
< doi:10.1093/bioinformatics/18.2.337>, seq-gen (Rambaut and Grassly
1997) < doi:10.1093/bioinformatics/13.3.235>, Hap-Clustering (Tzeng
2005) < doi:10.1002/gepi.20063> and PAML baseml (Yang 1997, 2007)
< doi:10.1093/bioinformatics/13.5.555>, < doi:10.1093/molbev/msm088>, for
simulating data, additional analyses, and searching the best tree. See
the phyclust website for more information, documentations and examples.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
