| Name : R-protHMM
| |
| Version : 0.1.1
| Vendor : obs://build_opensuse_org/devel:languages:R
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| Release : lp153.1.5
| Date : 2024-06-14 11:30:32
|
| Group : Development/Libraries/Other
| Source RPM : R-protHMM-0.1.1-lp153.1.5.src.rpm
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| Size : 0.31 MB
| |
| Packager : (none)
| |
| Summary : Protein Feature Extraction from Profile Hidden Markov Models
|
Description :
Calculates a comprehensive list of features from profile hidden Markov
models (HMMs) of proteins. Adapts and ports features for use with HMMs
instead of Position Specific Scoring Matrices, in order to take
advantage of more accurate multiple sequence alignment by programs such
as \'HHBlits\' Remmert et al. (2012) < DOI:10.1038/nmeth.1818> and \'HMMer\'
Eddy (2011) < DOI:10.1371/journal.pcbi.1002195>. Features calculated by
this package can be used for protein fold classification, protein
structural class prediction, sub-cellular localization and
protein-protein interaction, among other tasks. Some examples of
features extracted are found in Song et al. (2018)
< DOI:10.3390/app8010089>, Jin & Zhu (2021) < DOI:10.1155/2021/8629776>,
Lyons et al. (2015) < DOI:10.1109/tnb.2015.2457906> and Saini et al.
(2015) < DOI:10.1016/j.jtbi.2015.05.030>.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
