| Name : R-scquantum
| |
| Version : 1.0.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.1.10
| Date : 2024-06-14 11:12:59
|
| Group : Development/Libraries/Other
| Source RPM : R-scquantum-1.0.0-lp153.1.10.src.rpm
|
| Size : 0.04 MB
| |
| Packager : (none)
| |
| Summary : Estimate Ploidy and Absolute Copy Number from Single Cell Sequencing
|
Description :
Given bincount data from single-cell copy number profiling (segmented
or unsegmented), estimates ploidy, and uses the ploidy estimate to
scale the data to absolute copy numbers. Uses the modular quantogram
proposed by Kendall (1986) < doi:10.1002/0471667196.ess2129.pub2>,
modified by weighting segments according to confidence, and quantifying
confidence in the estimate using a theoretical quantogram. Includes
optional fused-lasso segmentation with the algorithm in Johnson (2013)
< doi:10.1080/10618600.2012.681238>, using the implementation from
glmgen by Arnold, Sadhanala, and Tibshirani.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
