| Name : R-sismonr
| |
| Version : 2.1.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.15.11
| Date : 2024-06-14 12:16:18
|
| Group : Development/Libraries/Other
| Source RPM : R-sismonr-2.1.0-lp153.15.11.src.rpm
|
| Size : 0.37 MB
| |
| Packager : (none)
| |
| Summary : Simulation of in Silico Multi-Omic Networks
|
Description :
A tool for the simulation of gene expression profiles for in silico
regulatory networks. The package generates gene regulatory networks,
which include protein-coding and noncoding genes linked via different
types of regulation: regulation of transcription, translation, RNA or
protein decay, and post-translational modifications. The effect of
genetic mutations on the system behaviour is accounted for via the
simulation of genetically different in silico individuals. The ploidy
of the system is not restricted to the usual haploid or diploid
situations, but is defined by the user. A choice of stochastic
simulation algorithms allow us to simulate the expression profiles (RNA
and if applicable protein abundance) of the genes in the in silico
system for the different in silico individuals. A tutorial explaining
how to use the package is available at
< https://oliviaab.github.io/sismonr/>. Manuscript in preparation; see
also Angelin-Bonnet O., Biggs P.J. and Vignes M. (2018)
< doi:10.1109/BIBM.2018.8621131>. Note that sismonr relies on Julia code
called internally by the functions. No knowledge of Julia is required
in order to use sismonr, but Julia must be installed on the computer
(instructions can be found in the tutorial, the GitHub page or the
vignette of the package).
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
