| Name : R-sssc
| |
| Version : 1.0.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.15.5
| Date : 2024-06-14 11:57:02
|
| Group : Development/Libraries/Other
| Source RPM : R-sssc-1.0.0-lp153.15.5.src.rpm
|
| Size : 0.23 MB
| |
| Packager : (none)
| |
| Summary : Same Species Sample Contamination Detection
|
Description :
Imports Variant Calling Format file into R. It can detect whether a
sample contains contaminant from the same species. In the first stage
of the approach, a change-point detection method is used to identify
copy number variations for filtering. Next, features are extracted from
the data for a support vector machine model. For log-likelihood
calculation, the deviation parameter is estimated by maximum likelihood
method. Using a radial basis function kernel support vector machine,
the contamination of a sample can be detected.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
