| Name : perl-Bio-FeatureIO
| |
| Version : 1.6.905
| Vendor : obs://build_opensuse_org/devel:languages:perl
|
| Release : 4.68
| Date : 2024-08-05 19:43:17
|
| Group : Development/Libraries/Perl
| Source RPM : perl-Bio-FeatureIO-1.6.905-4.68.src.rpm
|
| Size : 0.14 MB
| |
| Packager : (none)
| |
| Summary : Handler for FeatureIO
|
Description :
An I/O iterator subsystem for genomic sequence features.
Bio::FeatureIO is a handler module for the formats in the FeatureIO set
(eg, Bio::FeatureIO::GFF). It is the officially sanctioned way of getting
at the format objects, which most people should use.
The Bio::FeatureIO system can be thought of like biological file handles.
They are attached to filehandles with smart formatting rules (eg, GFF
format, or BED format) and can either read or write feature objects
(Bio::SeqFeature objects, or more correctly, Bio::FeatureHolderI
implementing objects, of which Bio::SeqFeature is one such object). If you
want to know what to do with a Bio::SeqFeatureI object, read
Bio::SeqFeatureI.
The idea is that you request a stream object for a particular format. All
the stream objects have a notion of an internal file that is read from or
written to. A particular FeatureIO object instance is configured for either
input or output. A specific example of a stream object is the
Bio::FeatureIO::gff object.
Each stream object has functions:
$stream->next_feature();
$stream->write_feature($feature);
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/perl:/CPAN-B/openSUSE_Tumbleweed/noarch |
