| Name : seaview
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| Version : 5.0.5
| Vendor : obs://build_opensuse_org/home:vojtaeus
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| Release : 15.4
| Date : 2024-07-16 15:10:37
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| Group : Productivity/Scientific/Other
| Source RPM : seaview-5.0.5-15.4.src.rpm
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| Size : 1.07 MB
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| Packager : (none)
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| Summary : Graphical user interface for sequence alignment and molecular phylogeny
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Description :
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. SeaView drives programs muscle or Clustal Omega for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. Seaview drives the Gblocks program to select blocks of evolutionarily conserved sites. SeaView computes phylogenetic trees by parsimony, using PHYLIP\'s dnapars/protpars algorithm, distance, with NJ or BioNJ algorithms on a variety of evolutionary distances, maximum likelihood, driving program PhyML 3.1. Seaview can use the Transfer Bootstrap Expectation method to compute the bootstrap support of PhyML and distance trees. Seaview uses the Treerecs method to reconcile gene and species trees. SeaView prints and draws phylogenetic trees on screen, SVG, PDF or PostScript files. SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet.
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/home:/vojtaeus/openSUSE_Slowroll/i586 |
