| Name : python3-steps-mpich
| |
| Version : 3.6.0
| Vendor : Fedora Project
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| Release : 36.fc41
| Date : 2024-07-20 05:36:34
|
| Group : Unspecified
| Source RPM : python-steps-3.6.0-36.fc41.src.rpm
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| Size : 8.76 MB
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| Packager : Fedora Project
| |
| Summary : steps built with mpich
|
Description :
STEPS is a package for exact stochastic simulation of reaction-diffusion
systems in arbitrarily complex 3D geometries. Our core simulation algorithm is
an implementation of Gillespie\'s SSA, extended to deal with diffusion of
molecules over the elements of a 3D tetrahedral mesh.
While it was mainly developed for simulating detailed models of neuronal
signaling pathways in dendrites and around synapses, it is a general tool and
can be used for studying any biochemical pathway in which spatial gradients and
morphology are thought to play a role.
STEPS also supports accurate and efficient computational of local membrane
potentials on tetrahedral meshes, with the addition of voltage-gated channels
and currents. Tight integration between the reaction-diffusion calculations and
the tetrahedral mesh potentials allows detailed coupling between molecular
activity and local electrical excitability.
We have implemented STEPS as a set of Python modules, which means STEPS users
can use Python scripts to control all aspects of setting up the model,
generating a mesh, controlling the simulation and generating and analyzing
output. The core computational routines are still implemented as C/C++
extension modules for maximal speed of execution.
STEPS 3.0.0 and above provide early parallel solution for stochastic spatial
reaction-diffusion and electric field simulation.
Documentation can be found here:
http://steps.sourceforge.net/manual/manual_index.html
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RPM found in directory: /vol/rzm3/linux-fedora-buffet/fedora/linux/development/41/Everything/x86_64/os/Packages/p |
